PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN10460.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 27513.1 Da    PI: 8.9734
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN10460.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF946.8e-30959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++nrqvt+skRrng++KKA+EL vLCda+v++i++sst+kl+ey+s
  PIN10460.1  9 KRIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKVSIIMISSTQKLHEYIS 59
                79***********************************************86 PP
2K-box912.1e-3071169199
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 yqk+ g++l+++ +e++q++l++Lk+ ++nL+re+R+++Ge+L++L + ++ +L +++++sl+ iR++K++++ +qie+++kk ++++e++++L  +++
  PIN10460.1  71 YQKAVGVDLWSSYYEKMQEHLNRLKEVNRNLRREIRQRMGESLNDLGYDQMVNLIEDMDNSLRLIRDRKYKVIGNQIETSKKKLRNVEEIHRNLVLEFD 169
                 799999****************************************************************************************87765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MARGNIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD AKVSIIMISS TQKLHEYISP  60
STTTKQVFDQ YQKAVGVDLW SSYYEKMQEH LNRLKEVNRN LRREIRQRMG ESLNDLGYDQ  120
MVNLIEDMDN SLRLIRDRKY KVIGNQIETS KKKLRNVEEI HRNLVLEFDA RQEDPHYGLV  180
ENEGDYNSVL GFPNGGPCII ALSLPPNHHH HHHQHNHNHP ALHSGGGSDL TTFALLE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-93MIKC_MADS family protein