PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN10941.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family GRAS
Protein Properties Length: 670aa    MW: 75125.8 Da    PI: 6.3349
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN10941.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.58.7e-1302856532373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  +lL++cAe +  ++ ++++++Larl elasp+g +p++Rl+ayfteALa r+ar +++++++ +p+e + +  +++ +al+l+++vsPi+kf h+t N
  PIN10941.1 285 LSLLVACAEQIGLKNIAAINHCLARLGELASPRGsSPVHRLVAYFTEALALRVARLWPHIFHITTPRELD-RVDDDSGTALRLLNQVSPIPKFIHFTSN 382
                 689*******************************99******************************9998.5678888999****************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 + +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el etg+rLa fAe++++pfef++ v++rled++l++L+vk+
  PIN10941.1 383 EILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGIGE----SKQELIETGDRLAGFAEAFNLPFEFHP-VVDRLEDVRLWMLHVKE 476
                 **************************************************....***************************.7**************** PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                 +E++aVn+ +qlh++l +++  +   +++L l++s++++vv+ +eqea+hn+ ++ +r++++l+yysa+fds+++++p +s  +ik+E++ ++rei+n+
  PIN10941.1 477 KETVAVNCLFQLHKMLYDTTGGTI--RDFLGLIRSTNAQVVITAEQEAKHNELTLDARLCNSLKYYSAIFDSIDSSVPLDSPVQIKIEEM-FAREIRNI 572
                 ****************88777666..89**************************************************************.******** PP

        GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.....sgslvlgWkdrpLvsvSaW 373
                 +aceg++r+erhet+ kW++ +e+ G++++ +se++  q +++l++++ + yrve++       sl+l W d+pL++vSaW
  PIN10941.1 573 IACEGRDRFERHETFDKWQQVMEQGGYRNLGISERELLQGQMMLKMYSCENYRVEKKqgehdASSLTLNWFDQPLYTVSAW 653
                 ************************************************999****664444467899************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    
MLAGCSSTLL SPRHRLRSET SAQFQACHIP TMSTQRLDLP CNFARKDASR SQPVRPVGLS  60
IEKPIEAKTS GCSLRQNIKL PPSATEGRRE KNDEFWEKSK SSIKKRYAGD VPYDEFNRTK  120
RKKGNDEEGH LSLGELSREN FWFHPGFNVP RSGSQITGLN TPQVPFSLTC SGDEERVCFV  180
PSDVIPPPLP PLSNIPWFDS VVTEITDLGE KNVEATKVPE KEASGSSSTS SESHHDLVRG  240
LGGNPVEHEI GNGSSQPNQG ESGMVFVQGH NGENNHIEHN CVELLSLLVA CAEQIGLKNI  300
AAINHCLARL GELASPRGSS PVHRLVAYFT EALALRVARL WPHIFHITTP RELDRVDDDS  360
GTALRLLNQV SPIPKFIHFT SNEILLRAFE GKDRVHIIDF DIKQGLQWPS LFQSLASRTN  420
PPSHVRITGI GESKQELIET GDRLAGFAEA FNLPFEFHPV VDRLEDVRLW MLHVKEKETV  480
AVNCLFQLHK MLYDTTGGTI RDFLGLIRST NAQVVITAEQ EAKHNELTLD ARLCNSLKYY  540
SAIFDSIDSS VPLDSPVQIK IEEMFAREIR NIIACEGRDR FERHETFDKW QQVMEQGGYR  600
NLGISERELL QGQMMLKMYS CENYRVEKKQ GEHDASSLTL NWFDQPLYTV SAWMPVDVAS  660
GSLSSYSQPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104123KKRYAGDVPYDEFNRTKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein