PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN11181.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C3H

Protein Properties

Length: 370aa MW: 40319.4 Da PI: 8.397

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN11181.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.9	2.5e-11	40	63	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C +++rtG+C yG++C+++H++ PIN11181.1 40 ADCAYYMRTGYCGYGAKCRYNHPR 63 78********************96 PP
2	zf-CCCH	40.3	5.1e-13	80	104	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++CkF+H++ PIN11181.1 80 EPACQYYLRTGTCKFGASCKFNHPK 104 689********************96 PP
3	zf-CCCH	33.9	5.2e-11	125	150	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF H++ PIN11181.1 125 GEKECSYYLKTGQCKFGMTCKFDHPQ 150 7899********************97 PP
4	zf-CCCH	41.9	1.7e-13	282	308	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++rtG CkyG++C+++H+p PIN11181.1 282 PGQPDCKYYMRTGDCKYGSSCRYNHPP 308 5789*********************97 PP
5	zf-CCCH	25.7	2e-08	329	354	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + C+f+++ +Ck+G +CkF H++ PIN11181.1 329 GVQACPFYLQKRYCKFGHTCKFDHPM 354 5678********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MEFYGDQQQP EWAQETGLGE SMRSLNLWDT EVYPERPGLA DCAYYMRTGY CGYGAKCRYN 60 HPRDRSSSLG GADYPERVGE PACQYYLRTG TCKFGASCKF NHPKNGGGSL INAPLNIYGY 120 PLRPGEKECS YYLKTGQCKF GMTCKFDHPQ PAGTPIPAPA RPFYPTMQSL SSPSPSPEQY 180 DSSTTGYRVA RPPLLPGSYV AGAYGPMLLP GVVPIPNWNP YSGSVSPAPS PGAQPSVGAA 240 SMYGLSQLGS SAPAFSGAYS QLPSPAGPSG SITKEHKFPE RPGQPDCKYY MRTGDCKYGS 300 SCRYNHPPDW LVSRSDCALS PLGLPLRPGV QACPFYLQKR YCKFGHTCKF DHPMTTVKYS 360 PASSYTEMPG

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MEFYGDQQQP EWAQETGLGE SMRSLNLWDT EVYPERPGLA DCAYYMRTGY CGYGAKCRYN  60
HPRDRSSSLG GADYPERVGE PACQYYLRTG TCKFGASCKF NHPKNGGGSL INAPLNIYGY  120
PLRPGEKECS YYLKTGQCKF GMTCKFDHPQ PAGTPIPAPA RPFYPTMQSL SSPSPSPEQY  180
DSSTTGYRVA RPPLLPGSYV AGAYGPMLLP GVVPIPNWNP YSGSVSPAPS PGAQPSVGAA  240
SMYGLSQLGS SAPAFSGAYS QLPSPAGPSG SITKEHKFPE RPGQPDCKYY MRTGDCKYGS  300
SCRYNHPPDW LVSRSDCALS PLGLPLRPGV QACPFYLQKR YCKFGHTCKF DHPMTTVKYS  360
PASSYTEMPG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-145	C3H family protein