PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN11309.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

SBP

Protein Properties

Length: 471aa MW: 51202.2 Da PI: 8.7735

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN11309.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.5	2.5e-40	182	259	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C vegC+ dls+akeyhr+h+vC+ hsk+p+v+v gle+rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+ PIN11309.1 182 RCVVEGCNIDLSTAKEYHRKHRVCDSHSKCPKVIVGGLERRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQQ 259 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MSHFSEMDWN VKWDWENFAG FGSKATESSK KLQLADWIVD DGEIDAGSFN LSTAAGNSGA 60 SGSDGGHISS AKSSISASTE SSTKDGMQKS NFRLTTFEGF SGNVSKKMET KETAVSGTSP 120 PLEASTGSVE PLIGLKLGKR TYFENSGAGG SVKNASFSVM PTPSSTCLKK TRSSGQNLPI 180 PRCVVEGCNI DLSTAKEYHR KHRVCDSHSK CPKVIVGGLE RRFCQQCSRF HSLSEFDEKK 240 RSCRRRLSDH NARRRKPQQE TVHFDSTRLS SPFYGGRQQL SFLLNNAPLI HSRNTANATW 300 DSMSNSKFTL TKGYPLKSSI DGCTGGQVHM PVIELPHVIN MHNNGANGLL ATKSSMPEVL 360 NPGPKGSLIS SHIDAAAATP EYGRALSLLS TNSSWGSYGP AESMLPLPPP HHQNETSMLH 420 AIPQGAPLSS SELWLTPHQS THPRLAANSN FQEIQLFKTP YEADFYSNIL N

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MSHFSEMDWN VKWDWENFAG FGSKATESSK KLQLADWIVD DGEIDAGSFN LSTAAGNSGA  60
SGSDGGHISS AKSSISASTE SSTKDGMQKS NFRLTTFEGF SGNVSKKMET KETAVSGTSP  120
PLEASTGSVE PLIGLKLGKR TYFENSGAGG SVKNASFSVM PTPSSTCLKK TRSSGQNLPI  180
PRCVVEGCNI DLSTAKEYHR KHRVCDSHSK CPKVIVGGLE RRFCQQCSRF HSLSEFDEKK  240
RSCRRRLSDH NARRRKPQQE TVHFDSTRLS SPFYGGRQQL SFLLNNAPLI HSRNTANATW  300
DSMSNSKFTL TKGYPLKSSI DGCTGGQVHM PVIELPHVIN MHNNGANGLL ATKSSMPEVL  360
NPGPKGSLIS SHIDAAAATP EYGRALSLLS TNSSWGSYGP AESMLPLPPP HHQNETSMLH  420
AIPQGAPLSS SELWLTPHQS THPRLAANSN FQEIQLFKTP YEADFYSNIL N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	239	256	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	4e-63	SBP family protein