PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN11354.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

CO-like

Protein Properties

Length: 393aa MW: 43535.8 Da PI: 5.6486

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN11354.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.5	2.7e-08	18	60	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +r C+ + k++++fC ++ +lC++C + H+ H++ PIN11354.1 18 ARACDSCLVKRARWFCAADDAFLCQSCDASVHSAnqlasrHER 60 578*****************************65777777776 PP
2	CCT	68.7	1.5e-23	337	380	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirY++RK +Ae+RpR+KGrFvk++ PIN11354.1 337 REAKVSRYREKRRTRLFSKKIRYQVRKLNAEKRPRMKGRFVKRT 380 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MIGISEGKTA NALGGKTARA CDSCLVKRAR WFCAADDAFL CQSCDASVHS ANQLASRHER 60 IRLETTSFKA TKVNSSTPAW HQGFTKKART PRHSKSTRLQ PPANHPLPLV PEINAEDLFV 120 EENEELDLLH RVPVFEPFGH EFGSEILKGV DGDDHDLNLE ELLSTCDEDL AEFAADVESL 180 LGTTGTEEAS GCGINEEIGI DEHLDGKKVK VEEDCDDEVQ AVIACHFDPA LDMELNWNFD 240 NASSMTGETG DEIKKEAAVE TTSNIDSGHE SQVKKRLLLR LNYEAAIAAW ATQGSPWTNG 300 VRPRFDDLDE FMVACMGEGS HPCGGVCGRS GANDAGREAK VSRYREKRRT RLFSKKIRYQ 360 VRKLNAEKRP RMKGRFVKRT TFSGSSLPYL MNK

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MIGISEGKTA NALGGKTARA CDSCLVKRAR WFCAADDAFL CQSCDASVHS ANQLASRHER  60
IRLETTSFKA TKVNSSTPAW HQGFTKKART PRHSKSTRLQ PPANHPLPLV PEINAEDLFV  120
EENEELDLLH RVPVFEPFGH EFGSEILKGV DGDDHDLNLE ELLSTCDEDL AEFAADVESL  180
LGTTGTEEAS GCGINEEIGI DEHLDGKKVK VEEDCDDEVQ AVIACHFDPA LDMELNWNFD  240
NASSMTGETG DEIKKEAAVE TTSNIDSGHE SQVKKRLLLR LNYEAAIAAW ATQGSPWTNG  300
VRPRFDDLDE FMVACMGEGS HPCGGVCGRS GANDAGREAK VSRYREKRRT RLFSKKIRYQ  360
VRKLNAEKRP RMKGRFVKRT TFSGSSLPYL MNK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	348	364	RRTRLFSKKIRYQVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	7e-84	CO-like family protein