PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN11426.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24347.5 Da    PI: 8.886
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN11426.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.64.4e-25956148
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye
  PIN11426.1  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYE 56
                79*********************************************9 PP
2K-box47.86.3e-179017416100
       K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                   ++e++ Lk eie L + +R +   + + ++l eL+ +e++Le  + ++Rs K+++++++i+ l++ke  lq +nk L++k++e
  PIN11426.1  90 DPKEEISMLKHEIEVLHKGLRFISRGGAGAMTLDELNVIEKRLEIWIDHVRSAKMDIMVQEIQLLKNKEGILQAANKHLQQKVDE 174
                 5589******************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MARGKIQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKLYEQATK  60
GTMQSLIEKY MRCNREIPAE EPKDKQPNMD PKEEISMLKH EIEVLHKGLR FISRGGAGAM  120
TLDELNVIEK RLEIWIDHVR SAKMDIMVQE IQLLKNKEGI LQAANKHLQQ KVDEQYGMGE  180
LAPMLTNNIQ YPLTTNIQTQ CPLTIPSETY LF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-74MIKC_MADS family protein