PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN11433.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

MIKC_MADS

Protein Properties

Length: 258aa MW: 29620.8 Da PI: 9.1404

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN11433.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98	3.7e-31	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g++yey+ PIN11433.1 9 KRIENNTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRVYEYA 58 79***********************************************8 PP
2	K-box	104.4	1.4e-34	81	173	8	100
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++e +a+ +qqe++kL+++i++Lq+++Rhl+Ge+L+sL++keL+qLe++Le+++++iR kK+e++l+++e lqk+e +l++en +Lr+k++e PIN11433.1 81 TTQEINAQFYQQESKKLRQQIQMLQNSNRHLMGEGLGSLNVKELKQLESRLERGITRIRGKKHEMILAETESLQKREIQLEQENACLRAKIQE 173 378999************************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
MGRGKIEIKR IENNTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRVYEYANN 60 NIRSTIERYK RATADSSNAY TTQEINAQFY QQESKKLRQQ IQMLQNSNRH LMGEGLGSLN 120 VKELKQLESR LERGITRIRG KKHEMILAET ESLQKREIQL EQENACLRAK IQENEKLQQL 180 SMMPSGQDFA FQAYLARNVL QLNMMDNVSA YPVSDKKTLH LGIFMECSHN SSSAELIVGV 240 ISLSEDSCIS EVDQFRIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.1	1e-100	MIKC_MADS family protein