PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN11440.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20676.7 Da    PI: 9.7916
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN11440.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.54.2e-141153345
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                i +++ r  tf kR++g++KK +EL +LC++e++ i++s +g+
  PIN11440.1 11 IADERTRRETFRKRKTGLFKKLSELKTLCEVEACGIVISGDGT 53
                778899999******************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MVRSKIKYEL IADERTRRET FRKRKTGLFK KLSELKTLCE VEACGIVISG DGTQAEVWPS  60
PNAASQVIQK FINLPTSSQT NNMIDQAGFL RANLSRYSKN LDKESKKIES MERELRLAEC  120
LTKEEVVTRN TDELHEILRL LERKIGMVDR RIAKIEPSSS NMAASAQQTN NEPDHGKGKQ  180
PV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-19M-type_MADS family protein