PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN11515.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

CO-like

Protein Properties

Length: 399aa MW: 43550.8 Da PI: 4.8663

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN11515.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16.3	2e-05	5	34	6	35
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHk 35 C+ ++e++++++C+++ lC +C + H+ PIN11515.1 5 CDFCGEQRAIIYCRSDVASLCLSCDCNVHS 34 ************************999995 PP
2	zf-B_box	20.7	8.7e-07	47	86	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +C++++++++ C + + lC++C ++H g H+ PIN11515.1 47 VCERCNSQPAFVRCIEEKISLCQNCDWTGHVGsnispqHK 86 8*****************************7766777776 PP
3	CCT	63.9	4.7e-22	342	385	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RYkeK+k+RkFeKk+rYesRKa+A+ R+RvKGrFvk+ PIN11515.1 342 RSDAVMRYKEKKKSRKFEKKVRYESRKARADIRKRVKGRFVKAG 385 889**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MGYLCDFCGE QRAIIYCRSD VASLCLSCDC NVHSANALSK RHMRTLVCER CNSQPAFVRC 60 IEEKISLCQN CDWTGHVGSN ISPQHKRQGV NCYTGCPSAA ELSAIWPFLL EQEMSSMSIA 120 DRRSTDCQAP QGKSNVQDAL RIELASDCQN LDVDRSSVWM ESLTPLIDQN VDPTPGATSP 180 AMPKFSVSGA KGPSLCENDN FYGDFNMDEV DISIENYEEL FGVALDNPEQ LFGNDGIDGI 240 FGTKDVSNLQ GGYANEALSI GGLNVMQSAC SNAASADSVM SCKTDPNLCF ARQAPSGLSF 300 SGLTGESSVG DYQDCGASSI PIVGEPPWYP PGPESSMPST SRSDAVMRYK EKKKSRKFEK 360 KVRYESRKAR ADIRKRVKGR FVKAGDAYDY DPLSPSRSF

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MGYLCDFCGE QRAIIYCRSD VASLCLSCDC NVHSANALSK RHMRTLVCER CNSQPAFVRC  60
IEEKISLCQN CDWTGHVGSN ISPQHKRQGV NCYTGCPSAA ELSAIWPFLL EQEMSSMSIA  120
DRRSTDCQAP QGKSNVQDAL RIELASDCQN LDVDRSSVWM ESLTPLIDQN VDPTPGATSP  180
AMPKFSVSGA KGPSLCENDN FYGDFNMDEV DISIENYEEL FGVALDNPEQ LFGNDGIDGI  240
FGTKDVSNLQ GGYANEALSI GGLNVMQSAC SNAASADSVM SCKTDPNLCF ARQAPSGLSF  300
SGLTGESSVG DYQDCGASSI PIVGEPPWYP PGPESSMPST SRSDAVMRYK EKKKSRKFEK  360
KVRYESRKAR ADIRKRVKGR FVKAGDAYDY DPLSPSRSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-129	CO-like family protein