PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN12014.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

LBD

Protein Properties

Length: 263aa MW: 30183.8 Da PI: 5.5366

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN12014.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	114.6	6.4e-36	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rr+C+++C lap fpa+qpk f+nvh+lFG++n+++llk+l ++e+ +am+s+ ++A+ r + PvyG++ i++l+ q++ +++el+++ + PIN12014.1 10 ACAACKYQRRRCTSECLLAPFFPADQPKMFQNVHRLFGVKNIQNLLKDLGPNEKAMAMKSIKFHANQREKYPVYGCLVDIQQLNYQIQMVEEELQAVLQ 108 7*********************************************************************************************99877 PP DUF260 100 e 100 + PIN12014.1 109 Q 109 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MTLNSGTGQA CAACKYQRRR CTSECLLAPF FPADQPKMFQ NVHRLFGVKN IQNLLKDLGP 60 NEKAMAMKSI KFHANQREKY PVYGCLVDIQ QLNYQIQMVE EELQAVLQQL AYYKQQQQHQ 120 QQETSSPIND YFSKLQLGVA HPGDVPLVHE ENPLSLVASQ PQVSCSNSDN VDYDINYLDF 180 KDNNVVNSSC QQSNDNNPNT MPHTMPIQQG TIQVDYNEMH PFFDRFDDTQ SNVGSKEAYE 240 SRFSLFFQHD NIRFCSCISQ VFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	6e-36	LBD family protein