PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN12105.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

HD-ZIP

Protein Properties

Length: 217aa MW: 25243.6 Da PI: 6.1684

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN12105.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.2	1.8e-20	62	114	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eql Le+ F +++++ ae++ +LA++lgL+ rqV vWFqNrRa++k PIN12105.1 62 KRKLSEEQLSLLENSFGSEHKLEAERKDRLAAELGLDPRQVAVWFQNRRARWK 114 45899***********************************************9 PP
2	HD-ZIP_I/II	115	4.5e-37	61	152	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eq++lLE+sF +e+kLe erK +la eLgl+prqvavWFqnrRAR+k+k+l+++y++Lk+++++ + e++rLe+e +L+e+l+e PIN12105.1 61 RKRKLSEEQLSLLENSFGSEHKLEAERKDRLAAELGLDPRQVAVWFQNRRARWKSKRLDEEYSKLKSEHETTVVEKCRLETELLKLKEQLHE 152 8****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence
MNSEVTDNQT VLISQYYPVG IISQLMPEQA VAAAAAATMK PRRRRRKNKE NEGGGDGLLM 60 RKRKLSEEQL SLLENSFGSE HKLEAERKDR LAAELGLDPR QVAVWFQNRR ARWKSKRLDE 120 EYSKLKSEHE TTVVEKCRLE TELLKLKEQL HEAKKEIQRL SERWDGIMSN SPSSCLSMET 180 MEPPFLGEFE IGGLENFFYP PETNYVHGFE WDNLYYI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	64	RRRRRKNKENEGGGDGLLMRKRK
2	43	65	RRRRRKNKENEGGGDGLLMRKRK
3	44	66	RRRRRKNKENEGGGDGLLMRKRK
4	45	67	RRRRRKNKENEGGGDGLLMRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18550.1	2e-45	HD-ZIP family protein