PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN12107.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MYB
Protein Properties Length: 249aa    MW: 28537.9 Da    PI: 9.0446
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN12107.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.6e-161158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+++++++G g W+ ++ + g++R++k+c++rw++yl
       PIN12107.1 11 KGAWTKEEDDRLKKCIEKWGDGKWHQVPLRAGLNRCRKSCRLRWLNYL 58
                     79********************************************97 PP
2Myb_DNA-binding48.52e-1564108147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +T +E +l+v+++k+lG++ W++Ia +++ gRt++++k++w+++
       PIN12107.1  64 RGYFTRDEVDLIVRLHKLLGNR-WSLIAGRLP-GRTANDVKNFWNTH 108
                      799*******************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MENNKRVGVR KGAWTKEEDD RLKKCIEKWG DGKWHQVPLR AGLNRCRKSC RLRWLNYLRP  60
NIKRGYFTRD EVDLIVRLHK LLGNRWSLIA GRLPGRTAND VKNFWNTHIE KNINSAGAGL  120
VLGRETEKTI TERNIIRPRP RTFSTLQVPG CPSIIDHQQS KTNSENPNDK QQPSSSTASL  180
SQDQDTINDS TNDDPDGCIR WWSNLLEITE TGERTPFSFS NEDYQITLSP GLGDANDCTD  240
QDRKISSYP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-60MYB family protein