PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN12501.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

MIKC_MADS

Protein Properties

Length: 228aa MW: 26196.1 Da PI: 9.7321

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN12501.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.3	3e-31	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g++yey+ PIN12501.1 9 KRIENNTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRVYEYA 58 79***********************************************8 PP
2	K-box	102.5	5.6e-34	82	173	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++e +a+ +qqe++kL+++i++Lq+++Rhl Ge+L+sL++ke++qLe++Le+++++iR+kK+el+l+++e lqk+e +l++en +Lr+k++e PIN12501.1 82 TQEINAQFYQQESKKLRQQIQMLQNSNRHLAGEGLGSLNVKEMKQLESRLERGITRIRAKKHELILAETESLQKREIQLEQENACLRAKIAE 173 78889************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MGRGKIEIKR IENNTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRVYEYANN 60 NIRSTIERYK RATTDSSGAY TTQEINAQFY QQESKKLRQQ IQMLQNSNRH LAGEGLGSLN 120 VKEMKQLESR LERGITRIRA KKHELILAET ESLQKREIQL EQENACLRAK IAENEKLQQL 180 SMVPAGQDYG VQAYLAGNVL QLNMMENVPA YSIPEKMTLH LGYVCFFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.1	9e-99	MIKC_MADS family protein