PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN12562.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family ARF
Protein Properties Length: 839aa    MW: 93425 Da    PI: 6.3322
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN12562.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.6e-23127228199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        +   +  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  PIN12562.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQT--PPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 221
                 99*****************************7444..44459************************************************..8899999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  PIN12562.1 222 LLGIRRA 228
                 ****997 PP
2Auxin_resp113.51.9e-37253337183
  Auxin_resp   1 aahaastksvFevvYnPr.astseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+v+YnPr as+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k
  PIN12562.1 253 AAHAAATNSCFTVFYNPRwASPSEFVIPLSKYAKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 337
                 79***************85899**************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    
MKLSTSGMGQ QAQEGEKKCL NSELWHACAG PLVSLPTVGS RVVYFPQGHS EQVAATTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPQEQKDA YLPVELGIPS  120
RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ TPPAQELIAR DLHDVEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SCFTVFYNPR WASPSEFVIP LSKYAKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI GDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSLF PLRLKRPWYP GASSFQDASN EALNGMAWLR GDAGEQGFNS MNFQSVGMFP  420
FMQQRIDPTS FRNDLGQQYQ AMLAAGLQNF GSGELIKHQL MQFQQPIHYL QQSGSHSNPL  480
SQPQQVIQPS VSSHMLPPQT QMLSDTMQRP LQQQIDNQSE EHPQQHTYQE AFLVRHDQLQ  540
QRQPSDVPSP SFTKPDFANS DSKFSASMVH SSMQNMLGSL CPEGSSNLLN FSRTGQQMLN  600
EPSPQQSWVA KFAQSPGSGC SSSKSLPPYS AKDNTIEQES CSLDVQNQAL FGANINSSGL  660
LLPTTVANIG TSVHADMSSM ALGSSGYQSP LYGYVQDSPD VLHGTGQVDQ PTSNRTFVKV  720
YKSGCVGRSL DIARFNSYQE LRQELGQMFG IQGLLEDPQR SGWQLVFVDR ENDILLLGDD  780
PWEAFVNNVW YIKILSPEDV LQLGKQEAES LNRNAVERIN NNDAQNLASG LPSLGSLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein