PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN12860.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 147aa    MW: 16693.5 Da    PI: 10.2619
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN12860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.86.5e-091153345
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                i+n      tf kR++g  K  +ELS+L ++++ +ii++++++
  PIN12860.1 11 ISNRKALFKTFEKRKKGQEKATHELSTLYEVDIGMIIYGPDQT 53
                666666667*******************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    
MVRAKLRMEL ISNRKALFKT FEKRKKGQEK ATHELSTLYE VDIGMIIYGP DQTEKFKEEM  60
QKLSKRMRGA KYPTWDEKYN CLLYDQLKEI VTVLMAKIGA VKVRINSMKG SRIPVSESSL  120
DESVGSRKCS FHAGFSSTST AAAFGVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.21e-06M-type_MADS family protein