PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN12869.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family GRAS
Protein Properties Length: 526aa    MW: 60496.2 Da    PI: 4.8404
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN12869.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS277.93e-851555251374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.......fsevsPilk 92 
                 l++ Ll+ Ae v +++  +a++lL +  +++sp+g+p++Rl++yfteAL +++ r++ ++  +   +     + ++ l alk+       f++  P+ +
  PIN12869.1 155 LIQNLLSSAEKVGDKQYDRAKKLLLECDKISSPRGSPVERLVFYFTEALYEKIDRETGKITPKGLGK-----KIDDPLEALKIpdkmliaFHKELPLSQ 248
                 5799***************************************************554444333222.....233333333333334567********* PP

        GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                 ++ +   qa+++ ++++++vH iDfdi +G+Q + L+qaL +R e+p  +l+iT++g    +ske++eetg++L +fA++l+++++fnv++++++ dl+
  PIN12869.1 249 ITKFSGIQAVVDNLSEARKVHFIDFDIRKGVQCIILMQALVDRYENPIeHLKITALGM---KSKESIEETGRQLMNFANSLDLKLSFNVVMVEDILDLD 344
                 *******************************************965544*********...68************************************ PP

        GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                  + ++++++E+++V   + l ++  ++  l++    v++++ksl+P v+vv+e e+++ns+ F+erf+eal +y + f+++++ + ++++er + E+ +
  PIN12869.1 345 KNLFELDNDEVVVVYACYTLTNMIGKPDYLNH----VMRMIKSLNPLVMVVTEVEVNCNSPVFVERFVEALFFYGSWFECMAECMKNNEDERFFGEKTC 439
                 ***********************966666666....*************************************************************** PP

        GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +g +i+nv+a+eg+er+ rh + + Wr+ ++++G+ +++ls +   qakl+l++++ +d y+ + + +sl+ gWk+ p  svS+W+
  PIN12869.1 440 FGSSIRNVIATEGEERKIRHVSIAVWRAFFMHFGLVEMELSMSSIYQAKLVLKNFScGDYYTFDFDGKSLIVGWKGMPFSSVSVWK 525
                 ********************************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    
MLSNTFQTGQ LHIHEGSVEY DYRDEEWEDL FEGKYHYDLD ITPQNLSSGS EFQGPVWMNS  60
QRSDQIPASS FNILNMYRSR SRRLDGQKMN FPTYEQECTI SCSLSIEKII ELAAEKFIQT  120
TSQNTIQLSD FSHPYPTSVI SQESVISQES QEVQLIQNLL SSAEKVGDKQ YDRAKKLLLE  180
CDKISSPRGS PVERLVFYFT EALYEKIDRE TGKITPKGLG KKIDDPLEAL KIPDKMLIAF  240
HKELPLSQIT KFSGIQAVVD NLSEARKVHF IDFDIRKGVQ CIILMQALVD RYENPIEHLK  300
ITALGMKSKE SIEETGRQLM NFANSLDLKL SFNVVMVEDI LDLDKNLFEL DNDEVVVVYA  360
CYTLTNMIGK PDYLNHVMRM IKSLNPLVMV VTEVEVNCNS PVFVERFVEA LFFYGSWFEC  420
MAECMKNNED ERFFGEKTCF GSSIRNVIAT EGEERKIRHV SIAVWRAFFM HFGLVEMELS  480
MSSIYQAKLV LKNFSCGDYY TFDFDGKSLI VGWKGMPFSS VSVWKF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.11e-47GRAS family protein