PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN12992.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C2H2

Protein Properties

Length: 437aa MW: 48556.8 Da PI: 9.9714

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN12992.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.2	7e-06	209	231	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F+ +nL+ H+ + H PIN12992.1 209 SCPECGEIFTKAENLELHQAVkH 231 8******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MAKTRNPRKH TKQKQKQEKQ PHSWAAVRSL FTCKYLHIQP QQQPQQEEQQ QKQKQKQKQK 60 QSQEPEDSKI NQKIKKQGKK EQTFEGMNKK AKKMKCSGSL CSNTKVMQKP EVPSPEEQKK 120 RALLVGSSSE SEASNRSMKT IDLNGGVVSN SSSSSSSSFT TVPSASPSIS GSFRNMPFRK 180 LSGCYECRMV VDPVLGMTRD PSLRATICSC PECGEIFTKA ENLELHQAVK HAVSELGPDD 240 TSKNIVEIIF QSSWLKKEVP VCKIDRILKV QNTPKTISKF EEYRETIKAK ATKLPKKHPR 300 CLADGNELLR FHCTTLMCSL GLNGSSNLCN SIPTCSVCSI IKHGFKVTSE VSSKGILTTA 360 TSGKAHDSCR VGLEDHGKRA MLVCRVIAGR VKKNSDGNLE DYDSIAGATG VYSNLDELYV 420 FNPKAILPCF VVVYRGF

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MAKTRNPRKH TKQKQKQEKQ PHSWAAVRSL FTCKYLHIQP QQQPQQEEQQ QKQKQKQKQK  60
QSQEPEDSKI NQKIKKQGKK EQTFEGMNKK AKKMKCSGSL CSNTKVMQKP EVPSPEEQKK  120
RALLVGSSSE SEASNRSMKT IDLNGGVVSN SSSSSSSSFT TVPSASPSIS GSFRNMPFRK  180
LSGCYECRMV VDPVLGMTRD PSLRATICSC PECGEIFTKA ENLELHQAVK HAVSELGPDD  240
TSKNIVEIIF QSSWLKKEVP VCKIDRILKV QNTPKTISKF EEYRETIKAK ATKLPKKHPR  300
CLADGNELLR FHCTTLMCSL GLNGSSNLCN SIPTCSVCSI IKHGFKVTSE VSSKGILTTA  360
TSGKAHDSCR VGLEDHGKRA MLVCRVIAGR VKKNSDGNLE DYDSIAGATG VYSNLDELYV  420
FNPKAILPCF VVVYRGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-103	C2H2 family protein