PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN13338.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

HD-ZIP

Protein Properties

Length: 240aa MW: 27496.6 Da PI: 4.6321

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN13338.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.4	1.4e-19	25	79	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++f++eq++ +e +Fe++ ++ +++ +LAk+lgL+ rqV +WFqNrRa++k PIN13338.1 25 KNKRRFSDEQIKSMEVMFESETKLEPKRKLQLAKELGLQPRQVAIWFQNRRARWK 79 67789*************************************************9 PP
2	HD-ZIP_I/II	116.7	1.4e-37	26	117	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eq+k++E +Fe+e+kLep+rK +la+eLglqprqva+WFqnrRAR+k+k++Ek+y++L ++y++l+++ e+L+ke+++L +l++ PIN13338.1 26 NKRRFSDEQIKSMEVMFESETKLEPKRKLQLAKELGLQPRQVAIWFQNRRARWKSKHIEKEYSVLLANYNNLASQFESLRKEKQSLLIQLQK 117 79************************************************************************************999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence
MEYSSTTESL GSLNTAVSIK KKKTKNKRRF SDEQIKSMEV MFESETKLEP KRKLQLAKEL 60 GLQPRQVAIW FQNRRARWKS KHIEKEYSVL LANYNNLASQ FESLRKEKQS LLIQLQKLKS 120 ETMGKSEDKK ENDEGQVEEN AGNMSSTDGE SDYAYKKIDF EANNVGWGCL EGGMLSDDDS 180 SIKAELLGLD DENELLKMVE PAGAADSSLT SAEDWESRLD SDDLINQPTD HSFQWWDFWS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	6e-45	HD-ZIP family protein