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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | PIN13368.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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| Family | GRAS | ||||||||
| Protein Properties | Length: 497aa MW: 57816.8 Da PI: 4.5026 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 102.7 | 5.3e-32 | 127 | 496 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99
l +lLl+ Aea++++++el + + +r+ ++++p g ++R+ y+ + L+++ ++++ ++ a+k+f++++P+ kf+h++ N
PIN13368.1 127 LSHLLLAYAEAMDNQETELPEVISQRIIQRVNPVGGIVERVLYYMFQNLNKKPDY-------------LKQESIKNFYLAFKAFYQIFPYGKFAHFVEN 212
579******************************************9999876554.............3333488999********************* PP
GRAS 100 qaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
aIlea+ ++ e + iDf+i++G+QW+++++a+ ++ ++Ri ++ +e++ + + eet++rL + ++ g++++ + + ++le++ +++
PIN13368.1 213 FAILEAMPKDvEIINLIDFEIGEGIQWASFMEAIKYQR---KEIRIISIKFNEEDesipLRWKFEETKRRLCDHGASHGLKVKVKEVGLQDLESV-MKN 307
********998999********************9754...56999999998888777778899**********************999999999.9** PP
GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvks.........lsPkvvvvveqeadh.nse..sFlerflealeyysalfdsleaklpres. 279
++ ++ + n+ + l ++ + ++ e+L l k+ + +++ + ++ n++ s+ + + +y al++s+e ++p++
PIN13368.1 308 IDYGRKSWYIFNCNVGLPHMGR--IRNKNDVFEFLTLAKNflynvtcyyTTKGIITYGDGDVRQsNTTckSYSSFLDGIFAHYQALLESMEFNFPSHLg 404
*******************983..333333455555555411111112144568999999976644435466666667789**************9998 PP
GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrve.eesgslvlgWkdrpLvsvSaWr 374
e+r+++E ++++ i+++ +++ e+++++ + + l+ + ++ +lse+ +ak l+++ g r+e e+++++vl W++ ++v v++W+
PIN13368.1 405 EARTSLECLFVAPYISSW-----DRKWEEMKQFDELELELG-VSLEGWNLSETSLVEAKELVKESVksPYGVRIEgEKKNEMVLRWNSVQMVRVCCWK 496
99*******999999876.....222356666666655554.458999**************9987333456666999*******************8 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 497 aa Download sequence |
MSLYDIYQSS ELHSNPFCMD DGEGKNAFSP PFSPDISSSM QYLETILSDE FHPDSAIHDI 60 SPLIDDFHID FDELDCIFNG DMPKPLDEYS DEWNLYDAMN VCEPPTDMMT SIVLPFEGKE 120 VDNQLFLSHL LLAYAEAMDN QETELPEVIS QRIIQRVNPV GGIVERVLYY MFQNLNKKPD 180 YLKQESIKNF YLAFKAFYQI FPYGKFAHFV ENFAILEAMP KDVEIINLID FEIGEGIQWA 240 SFMEAIKYQR KEIRIISIKF NEEDESIPLR WKFEETKRRL CDHGASHGLK VKVKEVGLQD 300 LESVMKNIDY GRKSWYIFNC NVGLPHMGRI RNKNDVFEFL TLAKNFLYNV TCYYTTKGII 360 TYGDGDVRQS NTTCKSYSSF LDGIFAHYQA LLESMEFNFP SHLGEARTSL ECLFVAPYIS 420 SWDRKWEEMK QFDELELELG VSLEGWNLSE TSLVEAKELV KESVKSPYGV RIEGEKKNEM 480 VLRWNSVQMV RVCCWKI |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G08250.1 | 6e-16 | GRAS family protein | ||||




