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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PIN14062.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 277aa MW: 30601.8 Da PI: 6.414 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 58.4 | 1.5e-18 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + +t+ ++ +v + ++fdfl ++v +
PIN14062.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDVTVRRGAKTVSSLHLKHCVHSYNVFDFLKEVVSK 86
5789************************************************************************99976 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 277 aa Download sequence |
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDVTVRRGAK 60 TVSSLHLKHC VHSYNVFDFL KEVVSKVPDY GHSDTAADVS KRRRVVANES NGSDEEFKRN 120 SMHETCQSSS SGRGRGRGRG RGRGRGRGRA SRATERELPQ HEVESGNQQN IKQVPSPGRP 180 TDTTSELKES SKEDKVSVAV SSDSRNFDLN TGVYENTEKT TSNAAVAASE STPGASDVKG 240 DEYLGLSEMD RMALDPVHFA QVSSRLDEDE EDYDEEG |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 101 | 105 | KRRRV |
| 2 | 133 | 142 | RGRGRGRGRG |
| 3 | 133 | 143 | RGRGRGRGRGR |
| 4 | 135 | 144 | RGRGRGRGRG |
| 5 | 135 | 145 | RGRGRGRGRGR |
| 6 | 137 | 146 | RGRGRGRGRG |
| 7 | 137 | 147 | RGRGRGRGRGR |
| 8 | 139 | 148 | RGRGRGRGRG |
| 9 | 139 | 149 | RGRGRGRGRGR |
| 10 | 141 | 150 | RGRGRGRGRG |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G12480.1 | 4e-67 | NF-YC family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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