PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN14480.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 79aa    MW: 9079.7 Da    PI: 10.4862
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN14480.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.15.5e-19858151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+ie+ ++ qvtfskRr  ++KKA+E+ v Cd++va + fs++g++  +++
  PIN14480.1  8 KKIEDVTKCQVTFSKRRSSLIKKANEVAVCCDVDVAFVAFSPSGRVSKFCN 58
                68*********************************************9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    
MGRKIDMKKI EDVTKCQVTF SKRRSSLIKK ANEVAVCCDV DVAFVAFSPS GRVSKFCNQR  60
RIEDVLNRYV NLPVDKRLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-16MIKC_MADS family protein