PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN15199.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

ARF

Protein Properties

Length: 1118aa MW: 123221 Da PI: 6.4759

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN15199.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.6	2.1e-22	132	233	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ ++++++ +l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++++l PIN15199.1 132 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQQL 226 99***************************96555444..8********************************************..5688889 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ PIN15199.1 227 LLGIRRA 233 **997 PP
2	Auxin_resp	118.4	6e-39	258	341	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka+ +++s+GmRf+m+fete+s +rr++Gt++g+s+ldpvrW+nS+Wr+L+ PIN15199.1 258 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGISELDPVRWKNSQWRNLQ 341 79****************************998669******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1118 aa Download sequence
MKTPTAGAGA QQANAAAAEV EKKSINSELW QACAGPLVNL PAAGTHVVYF PQGHSEQVAA 60 SMKKDVDAQI PNYPNLPSKL LCILHSVTLH ADPETDEVYA QMTLQPVPLF DKDALLRSDL 120 SMKANKPQTE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFTMQPPAQ ELVARDLHDN 180 VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL FAGDSVLFIR DEKQQLLLGI RRANRQPTNL 240 SSSVLSSDSM HIGILAAAAH AAANNSPFTV FYNPRASPSE FVIPLAKYYK AVCSNQISLG 300 MRFRMMFETE ESGTRRYMGT ITGISELDPV RWKNSQWRNL QVGWDESTAG ERRNRVSIWE 360 IEPVTAPFFI CPTPPFFRAK RPRQPGMPDD DPSDLDHLFR RTMPWIGDDF GLKDPQALPG 420 LSLVQWMNMQ QNPTLANAMQ PNYMSSLSSS VLQNLAGADI SRQLGLPATQ IPQQNNLQFN 480 AQRPTQTVQQ LDQLQKLPSS TLNPSGSIIQ PQQQLTDITQ SSRQNLIGQN LPTSQVPSQI 540 LQSQSPLQTQ NVLHQQQSLL NHQLQRNLSQ NVPQQQPQQQ QPQQQQILSH SQQPNLMPSQ 600 SSDHANQQLH VSDNQRQVRL LQKLHQQQQS LLAQQSAMQQ LPSQLAQLQD HHEQQLLDSP 660 QNFSRSMPTT QMLEPSQATT GMLPQSHVIA QQMTANNSQS NLRFVQPPQQ TKLQQQQSGM 720 MSELPGHVGH ALNPINSQLS AGSSSLLTGA AGGGQSAVTD DVPSCSTSPS TNNCPNGVQS 780 FLNGRNNCSA IIGDEIPQSS AALSNPSGLE TMPSSGSLVK DFQQKPDAKP SNISKTQNQG 840 FFASQPYLNV TGTQVDYLDS SSSVTSVLSQ NDVQIPPNNN SLSFNSQSML FRDVCQDGEV 900 QGDPRSNLPF GANIDNQLGM PMVPEPLITK DMVGSGKDFP TNLSSGGGML SSYENPKEAQ 960 PELSSSMVSQ SFGVPEMTFN SLDSTINDGS FMNRGAWAPP QMPRMRTYTK VYKRGAVGRS 1020 IDIARYSGYD DLKQDLARRF GIEGQLEDRQ RIGWKLVYVD HENDVLLVGD DPWEEFVNCV 1080 RCIKILSPQE VQQMSLDGDF GNGVLPNQAC SSSDNGVN

Sequence ? help Back to Top

Protein Sequence Length: 1118 aa Download sequence

MKTPTAGAGA QQANAAAAEV EKKSINSELW QACAGPLVNL PAAGTHVVYF PQGHSEQVAA  60
SMKKDVDAQI PNYPNLPSKL LCILHSVTLH ADPETDEVYA QMTLQPVPLF DKDALLRSDL  120
SMKANKPQTE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFTMQPPAQ ELVARDLHDN  180
VWTFRHIYRG QPKRHLLTTG WSLFVSGKRL FAGDSVLFIR DEKQQLLLGI RRANRQPTNL  240
SSSVLSSDSM HIGILAAAAH AAANNSPFTV FYNPRASPSE FVIPLAKYYK AVCSNQISLG  300
MRFRMMFETE ESGTRRYMGT ITGISELDPV RWKNSQWRNL QVGWDESTAG ERRNRVSIWE  360
IEPVTAPFFI CPTPPFFRAK RPRQPGMPDD DPSDLDHLFR RTMPWIGDDF GLKDPQALPG  420
LSLVQWMNMQ QNPTLANAMQ PNYMSSLSSS VLQNLAGADI SRQLGLPATQ IPQQNNLQFN  480
AQRPTQTVQQ LDQLQKLPSS TLNPSGSIIQ PQQQLTDITQ SSRQNLIGQN LPTSQVPSQI  540
LQSQSPLQTQ NVLHQQQSLL NHQLQRNLSQ NVPQQQPQQQ QPQQQQILSH SQQPNLMPSQ  600
SSDHANQQLH VSDNQRQVRL LQKLHQQQQS LLAQQSAMQQ LPSQLAQLQD HHEQQLLDSP  660
QNFSRSMPTT QMLEPSQATT GMLPQSHVIA QQMTANNSQS NLRFVQPPQQ TKLQQQQSGM  720
MSELPGHVGH ALNPINSQLS AGSSSLLTGA AGGGQSAVTD DVPSCSTSPS TNNCPNGVQS  780
FLNGRNNCSA IIGDEIPQSS AALSNPSGLE TMPSSGSLVK DFQQKPDAKP SNISKTQNQG  840
FFASQPYLNV TGTQVDYLDS SSSVTSVLSQ NDVQIPPNNN SLSFNSQSML FRDVCQDGEV  900
QGDPRSNLPF GANIDNQLGM PMVPEPLITK DMVGSGKDFP TNLSSGGGML SSYENPKEAQ  960
PELSSSMVSQ SFGVPEMTFN SLDSTINDGS FMNRGAWAPP QMPRMRTYTK VYKRGAVGRS  1020
IDIARYSGYD DLKQDLARRF GIEGQLEDRQ RIGWKLVYVD HENDVLLVGD DPWEEFVNCV  1080
RCIKILSPQE VQQMSLDGDF GNGVLPNQAC SSSDNGVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein