PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN15433.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family NF-YC
Protein Properties Length: 237aa    MW: 26754.6 Da    PI: 9.8698
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN15433.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC31.34.3e-10132222999
       NF-YC   9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                 + e++++ +  ++P+ ri +i+++d+   +is ea  l+ +a e f+  ++  ++  a   +++    + ++++v++ + f fl d vp++
  PIN15433.1 132 EAEEKSENALYRFPMNRISRIIRSDNPDIRISQEAVFLINRASEKFLQVFSREAYACAFIDQKNYTAYNHLSSVVSKRKRFAFLSDFVPEK 222
                 567777778889************988888****************99999999*999999999999*********************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MAKNQVAAGR TRNKNKSKTE NKSKSTGKTS TAVNTKSKNK GRNKINKTAN DDASGEETKV  60
LAVPSSSTES QKEDVVESSE AEEEDGVEEQ SPTDEDEKEA KRQSKRIKKK SRKEDVKSKG  120
KKRSKNEDDE EEAEEKSENA LYRFPMNRIS RIIRSDNPDI RISQEAVFLI NRASEKFLQV  180
FSREAYACAF IDQKNYTAYN HLSSVVSKRK RFAFLSDFVP EKVKAEDALA QISASEK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113KRIKKKSRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.17e-30NF-YC family protein