PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN15552.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MYB
Protein Properties Length: 252aa    MW: 29398.2 Da    PI: 7.568
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN15552.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.26.1e-163077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEd +l+++++ +G g+W+  ar  g++Rt+ +c+ rw +yl
       PIN15552.1 30 RGAWSFEEDSILINYIAIHGEGQWSHLARNAGLNRTGRSCRMRWKNYL 77
                     89********************************************97 PP
2Myb_DNA-binding52.51.1e-1683126146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE+ ++++++  +G++ W++Ia++++ +Rt++++k++w++
       PIN15552.1  83 RGNFTPEEQVRILELHCHYGNR-WSKIAQHLP-KRTDNEIKNYWRT 126
                      89********************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MLMDLKTLEA INNVVSCQDK KEETNIRVRR GAWSFEEDSI LINYIAIHGE GQWSHLARNA  60
GLNRTGRSCR MRWKNYLQPN IRRGNFTPEE QVRILELHCH YGNRWSKIAQ HLPKRTDNEI  120
KNYWRTRVRK QAKLLKCDIN SFEFREFIRT MWLPILSEQI RASKPHGDPA NGVDDTINRP  180
GPVNMDYSAG WCGDGLLEPV EAHPVSGMEE LSKNSGWLDD DVFRVGYGLH GFESPEWFNY  240
KELSDGYFWL SP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.12e-64MYB family protein