PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN16131.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family LBD
Protein Properties Length: 205aa    MW: 22421.7 Da    PI: 7.1219
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN16131.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.43.2e-40381381100
      DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +CaaCk+lrr+C +d Cvlapyfp ++p kf  +h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+ +l+++la+++
  PIN16131.1  38 PCAACKILRRRCIADkCVLAPYFPPSDPLKFTTAHRVFGASNIIKFLQELPEAQRADAVSSMVYEANARLRDPVYGCAGAICQLQKQVIELQEQLAKAQ 136
                 7***********7666*********************************************************************************99 PP

      DUF260  99 ee 100
                 +e
  PIN16131.1 137 AE 138
                 87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MLDTKHLQLL KMEGSASSDQ TTITTSSSCR GVGMVMSPCA ACKILRRRCI ADKCVLAPYF  60
PPSDPLKFTT AHRVFGASNI IKFLQELPEA QRADAVSSMV YEANARLRDP VYGCAGAICQ  120
LQKQVIELQE QLAKAQAEII NIQCQNANLM ALICTMEFSQ SSQTTAPNNL RSLSNFASSP  180
RSDLSDTGFL SESNLGLLYD QSLWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.15e-71LBD family protein