PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN16209.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 229aa    MW: 25161.5 Da    PI: 4.9505
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN16209.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.81.2e-222467144
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                k+ien snrqvtfskRr g++KKA+EL++LC+ae+a+i+ s   
  PIN16209.1 24 KKIENLSNRQVTFSKRRGGLFKKASELCILCGAEIAIIVHSLGK 67
                68*************************************98655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MVILKNNTQM TKKTTQGRKK IEIKKIENLS NRQVTFSKRR GGLFKKASEL CILCGAEIAI  60
IVHSLGKRVF VFGHTTVDSV IDRFLSGGGA AAEGAENCLV AKTRDYDQHC SDVCRELEAE  120
KRRREAIEEG KRAAGGDGGF WWNAAVEELD VEELEEYAAA LEELMKNVTL RADDLMLINS  180
AAAAGRTVEA YDGEGCHLLE DMGAFVDQNQ GITCGLDDGG FGNFKFLDF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-31M-type_MADS family protein