PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN16278.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

WRKY

Protein Properties

Length: 360aa MW: 39117.9 Da PI: 4.784

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN16278.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.9	5.7e-30	166	224	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+vers +dp ++++ Y+geH+h+ PIN16278.1 166 ADSWAWRKYGQKPIKGSPYPRNYYRCSTSkGCAARKQVERSPSDPGIFVVSYTGEHTHP 224 69**********************9988**************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MDDDWDLHAV VRGCTSATTT TASAATPTTT SDPFPSFSSK PFHEDQNSFD FPGLMDDRNE 60 NPFQGLQEIY QEFCVDPPSP PASTSAVTIS TPAGHVFQSH QEIVQVQPPL VQMNMQNQES 120 LPFMSPRLGS SSHGFSAINP QPIRPRRRKN QQMKMVRQMT QEELSADSWA WRKYGQKPIK 180 GSPYPRNYYR CSTSKGCAAR KQVERSPSDP GIFVVSYTGE HTHPRPAHRS SLAGSTRSKF 240 SSSPSTTTAA AAKSNNNKIN NALLLQKGSS FSPTTPLVEG EAGAQNDDVV MAMDEEDGGA 300 GDEDEENIIM IRNDLMNDDE DIFKGFQDSD QSSGGGDLFP TGLLSSPPWT PTSSAAGGGD

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MDDDWDLHAV VRGCTSATTT TASAATPTTT SDPFPSFSSK PFHEDQNSFD FPGLMDDRNE  60
NPFQGLQEIY QEFCVDPPSP PASTSAVTIS TPAGHVFQSH QEIVQVQPPL VQMNMQNQES  120
LPFMSPRLGS SSHGFSAINP QPIRPRRRKN QQMKMVRQMT QEELSADSWA WRKYGQKPIK  180
GSPYPRNYYR CSTSKGCAAR KQVERSPSDP GIFVVSYTGE HTHPRPAHRS SLAGSTRSKF  240
SSSPSTTTAA AAKSNNNKIN NALLLQKGSS FSPTTPLVEG EAGAQNDDVV MAMDEEDGGA  300
GDEDEENIIM IRNDLMNDDE DIFKGFQDSD QSSGGGDLFP TGLLSSPPWT PTSSAAGGGD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	149	PRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	3e-46	WRKY family protein