PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN16296.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family LBD
Protein Properties Length: 204aa    MW: 22410.5 Da    PI: 9.5736
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN16296.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260927.1e-292103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C++lr++C+++Cvl + +     p +q +++ +v+k+FG++ ++++l+++p+++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e+
  PIN16296.1   2 SCNGCRILRKGCNENCVLKQGLqaidtPLAQGNATVFVAKFFGRAGLISFLSSVPQSQRPALFQSLLFEACGRTVNPVSGAVGLLWTGNWHMCQSAVET 100
                 6*********************7777777899****************************************************************998 PP

      DUF260  95 all 97 
                 +l+
  PIN16296.1 101 VLR 103
                 765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MSCNGCRILR KGCNENCVLK QGLQAIDTPL AQGNATVFVA KFFGRAGLIS FLSSVPQSQR  60
PALFQSLLFE ACGRTVNPVS GAVGLLWTGN WHMCQSAVET VLRGGSPRSS PEFEEVNNND  120
FYGSRDLNVR LERKGFDGDE GRGLNLGLKA SFPARMTARG RGKRRAATPS DESEMTTLES  180
GFACHQGLQR NHHVRETKLL RLFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-61LBD family protein