PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN16360.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 104aa    MW: 12314 Da    PI: 10.6411
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN16360.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.21.4e-20949141
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                krie+ks r+vtf+kRrng+lKKA+EL vLCd++v  ii+s
  PIN16360.1  9 KRIEDKSAREVTFTKRRNGLLKKAKELLVLCDVDVTAIILS 49
                79************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    
MGRRKLEIKR IEDKSAREVT FTKRRNGLLK KAKELLVLCD VDVTAIILSF IIFAALTDLI  60
CKINGLEAEK EKLKRMNFRM KVFFSLHCVC IRWALFFFSF FFLM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.21e-17MIKC_MADS family protein