PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN16422.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family HD-ZIP
Protein Properties Length: 234aa    MW: 26121.3 Da    PI: 6.5325
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN16422.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.5e-19139193256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  PIN16422.1 139 RKKLRLSKDQSAILEESFKEHNTLNPKQKMALAKRLGLRPRQVEVWFQNRRARTK 193
                 788899***********************************************98 PP
2HD-ZIP_I/II130.56.5e-42139228191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlsk+q+++LEesF+e+++L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
   PIN16422.1 139 RKKLRLSKDQSAILEESFKEHNTLNPKQKMALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 228
                  69*************************************************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MMVEREDLGL SLSLSFPAEK SAASNPSPLP LNLMPSSSPS TFSIMQKTCW NQPFSSSDLS  60
SETCRVETRS FLKGIDVNCL PAAAADVEEE AGVSSPNSTI SSVSGKRSER EASGGSEEHD  120
GERACSRGVS DEEDAENSRK KLRLSKDQSA ILEESFKEHN TLNPKQKMAL AKRLGLRPRQ  180
VEVWFQNRRA RTKLKQTEVD CEFLKRCCEN LTEENRRLQK EVQELRALKL SPQL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138144SRKKLRL
2188196RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.12e-79HD-ZIP family protein