PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN16427.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

CO-like

Protein Properties

Length: 377aa MW: 41610.8 Da PI: 6.9651

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN16427.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24	8.3e-08	25	62	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39 + C+ +++ + lfC+ ++ ++C +C ++ H + H++ PIN16427.1 25 KPCDYCKSAAALLFCRADSAFMCITCDEKLHGNnkHER 62 57*****9*******************5578986 PP
2	zf-B_box	27.8	5.2e-09	63	108	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H++vp+ PIN16427.1 63 VWMCEVCEQAPASVTCKADAAALCVTCDRDIHSAnplasrHERVPV 108 689*****************************66999999999986 PP
3	CCT	70.7	3.6e-24	305	348	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ PIN16427.1 305 REARVLRYKEKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 348 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MGIEQDGGGA ARAKFFPAGL NVVAKPCDYC KSAAALLFCR ADSAFMCITC DEKLHGNNKH 60 ERVWMCEVCE QAPASVTCKA DAAALCVTCD RDIHSANPLA SRHERVPVVP FYDTAESVVM 120 KSTAPTLLVP ASDCNTNIFE APPSHHERKL EQSGYIPDSW ISMNPIITTA KLPADAPDLK 180 SMELLFQDSD QFLDFDNYQI SSQPYGDSVV PVQTTIKPPV PTRLTHDRSP ENRFEIDFTR 240 SNINSYHNSY STPSLSHSVS SSSMDVGFVP DGSSLSEISY PFARNINSSV DLTGNQGSQA 300 AGLDREARVL RYKEKRKNRK FEKTIRYASR KAYAETRPRI KGRFAKRTDA EPDIDRIFGA 360 GSVNLMGDAR YGVVPSF

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MGIEQDGGGA ARAKFFPAGL NVVAKPCDYC KSAAALLFCR ADSAFMCITC DEKLHGNNKH  60
ERVWMCEVCE QAPASVTCKA DAAALCVTCD RDIHSANPLA SRHERVPVVP FYDTAESVVM  120
KSTAPTLLVP ASDCNTNIFE APPSHHERKL EQSGYIPDSW ISMNPIITTA KLPADAPDLK  180
SMELLFQDSD QFLDFDNYQI SSQPYGDSVV PVQTTIKPPV PTRLTHDRSP ENRFEIDFTR  240
SNINSYHNSY STPSLSHSVS SSSMDVGFVP DGSSLSEISY PFARNINSSV DLTGNQGSQA  300
AGLDREARVL RYKEKRKNRK FEKTIRYASR KAYAETRPRI KGRFAKRTDA EPDIDRIFGA  360
GSVNLMGDAR YGVVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	4e-93	CO-like family protein