PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN16742.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family LBD
Protein Properties Length: 200aa    MW: 21714.6 Da    PI: 4.7841
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN16742.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.42.1e-42421411100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++kll++lpe +r da++s+vyeA+ar+rdPvyG++g i +lq+q+  l+aela++++
  PIN16742.1  42 PCAACKILRRRCAEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQELPEAQRADAVNSMVYEANARLRDPVYGCAGAICQLQKQIGDLQAELAKAQA 140
                 7***********************************************************************************************998 PP

      DUF260 100 e 100
                 e
  PIN16742.1 141 E 141
                 7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MEYSENTTTT TVAATAATAG EGSPAALSPT SSSSSPSVVL SPCAACKILR RRCAEKCVLA  60
PYFPPTEPLK FTIAHRVFGA SNIIKLLQEL PEAQRADAVN SMVYEANARL RDPVYGCAGA  120
ICQLQKQIGD LQAELAKAQA EIMNIQCQNA NLFELICKQV ASQNHDQQNN LPQQTLPYQE  180
TSAFFFDEST LGVAWEPLWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.14e-71LBD family protein