PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN16777.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 159aa    MW: 17423.8 Da    PI: 5.0044
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN16777.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.61.6e-18955147
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                k ie++ +r++tf+kRr+g+ KK +EL+ LCdae a+i+fs  g++y
  PIN16777.1  9 KLIEDDAKRHTTFTKRRKGLEKKTKELCHLCDAEGAIIVFSRAGNVY 55
                569*****************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    
MVRRKIEIKL IEDDAKRHTT FTKRRKGLEK KTKELCHLCD AEGAIIVFSR AGNVYACGNP  60
AVNVIVDRYL ALAEDNGGED RVHGDADEEE AAPPLTEMEK MIVEAIEGGR LAWEATVRNL  120
GLSELAELES LVEEAKRKVA ARAREVVASG RGDIPDGGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.12e-18M-type_MADS family protein