PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN17336.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family ARF
Protein Properties Length: 670aa    MW: 75161 Da    PI: 6.782
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN17336.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.6e-23128227197
                 EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                 f+k+lt sd++++g +++ +k+a+e+     ++++  +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L++gD++vF +   ++ el+v
  PIN17336.1 128 FCKILTASDTSTHGGFSVLRKHANEClppldMNQPIPTQDLVAKDLHGYEWRFKHIFRGQPKRHLLTTGWSTFVASKRLNAGDSFVFLR--GDSDELHV 224
                 99****************************8444445569************************************************3..36777999 PP

                 EEE CS
          B3  95 kvf 97 
                 +v+
  PIN17336.1 225 GVR 227
                 997 PP
2Auxin_resp951.2e-31254333183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t++ F v+Y+Pr+  s+F++ ++k++ka+++ +svG+Rf+m+fe+eds+err++Gt++g  dl + +W +S+WrsLk
  PIN17336.1 254 ASHAITTQTLFVVYYKPRT--SQFIIGLNKYLKAINHGFSVGTRFQMRFEGEDSPERRFAGTIIGAGDLAS-QWIDSEWRSLK 333
                 789***************6..9**********************************************887.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    
MAHADELRRG GSHETSVRSD DHLYTELWKA CAGPLADVPC TGERVYYFPQ GHMEQLEAST  60
NQELSPKIPL FNLPWKILCR VFHTELLAEP ETDEVYARIT LHPEPDQTEP TSPDPCLRNP  120
PKQTARSFCK ILTASDTSTH GGFSVLRKHA NECLPPLDMN QPIPTQDLVA KDLHGYEWRF  180
KHIFRGQPKR HLLTTGWSTF VASKRLNAGD SFVFLRGDSD ELHVGVRHLA RQQSSMPPSV  240
ISSQSMHLGV LATASHAITT QTLFVVYYKP RTSQFIIGLN KYLKAINHGF SVGTRFQMRF  300
EGEDSPERRF AGTIIGAGDL ASQWIDSEWR SLKIQWDEPA TIQRPDRVSP WEIEPFEASP  360
SIDVSQPASK IKRCRTIDLP LSETVIPLGC QTPRTFLKLS HTMSTKDPLS NENQVFHPPK  420
TEDLNSNLPN SSSSRSHPCG MWPSTSQNGQ LNLFQDYTEG NKNVPGQCID QTEGMKRFET  480
TPMCRLFGID LLSNSNKIPP AVKEASLPCP KVTANCDNVF RILHQRSEAD RNSNADDLDP  540
AKLKTHIQLD VSPYATQDKQ SLASSSRTRA KVQMQGIAVG RGIDLTAFEG YDDLMTELEN  600
MFEIKGELSR GPQNKWEVIY TDKEGQMMLV GDDPWPEFCK TARKICICPS EQVKKANPTC  660
SKPTLSSQDA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.10.0ARF family protein