PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN17431.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family LBD
Protein Properties Length: 211aa    MW: 22847.1 Da    PI: 5.8268
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN17431.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.21.4e-292103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl++ A  r+ +Pv+Gavg++++++++++q+++e+
  PIN17431.1   2 SCNGCRVLRKGCSENCILRPCLqwietAEAQGHATVFVAKFFGRAGLMSFISAVPENQRPGLFQSLLFDAAGRTVNPVNGAVGLLWTGNWHVCQAAVET 100
                 6*********************9999777889****************************************************************999 PP

      DUF260  95 all 97 
                 +l+
  PIN17431.1 101 VLR 103
                 876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MSCNGCRVLR KGCSENCILR PCLQWIETAE AQGHATVFVA KFFGRAGLMS FISAVPENQR  60
PGLFQSLLFD AAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALRPI PELFGGASEP  120
DEASDCTDMF KLQDPGVSPP QKRRRFPDEP AKVMQLADLD LSLTPGFPTK KSNPSPETRR  180
LGSPSLNSEE SLTTTCGDEP ATEIKLLNLF N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.13e-88LBD family protein