PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN17457.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family ARF
Protein Properties Length: 896aa    MW: 98683.6 Da    PI: 6.6283
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN17457.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56.1e-24133233198
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        + +++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  PIN17457.1 133 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQTPPA--QELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNENSQL 227
                 99****************************97544444..48************************************************..6767777 PP

                 EEEEE- CS
          B3  93 vvkvfr 98 
                 +++++ 
  PIN17457.1 228 LLGIRH 233
                 988876 PP
2Auxin_resp119.62.5e-39259342183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k+ ka++ +++svGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k
  PIN17457.1 259 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 342
                 79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 896 aa     Download sequence    
MRLSSSSSPS TGFNAQPEEG EKKCLNSELW HACAGPLVSL PQIGSRVVYF PQGHSEQVAA  60
STNKEVDATI PNYPGLQPQL ICQLHNVTMH ADVETDEVYA QMTLQPLTPQ EQKDICLLPA  120
ELGAPSKQPT NYFCKTLTAS DTSTHGGFSV PRRAAEKVFP PLDYSQTPPA QELIAKDLHG  180
NEWKFRHIFR GQPKRHLLTT GWSVFVSAKR LVAGDSVIFI WNENSQLLLG IRHANRPQTI  240
MPSSVLSSDS MHIGLLAAAA HAAATNSRFT IFYNPRASPS EFVIPLAKYA KAVYHTRISV  300
GMRFRMLFET EESSVRRYMG TITGIGDLDP VRWPNSHWRS VKVGWDESTA GDRQPRVSLW  360
EIEPLTTFPM YPSPYSLRLK RPWPSGLPSF PGFKDGDMSM NSPLTWLRGG IGDQGMQSLN  420
FQGLGVSPWM QPRVDASSIF SLQPDMYQVM AAAALQDTGS LDPSKLANQP LLQFQHNGSH  480
VSTPLLQSQM LQQGHSQSSF LQNNPQNNAI SQAQILQQQL QSRQPFIDQH QQQQLQQSQR  540
LHPQFQDQQA KKTLPIGSAS ETQFTSMQAL SSTSQLQNFS DLIGNHMASS NHSSMQSLLS  600
SFSHETASPQ VNMRGPNPPV SHSSSSKRVA LDPQLPSKVS QFGVPHPEEM VTPNSKVSDL  660
SALLPPFPGR EFSDFQGVTH SNNNALFGVS TNSSANMLNG ISTLRNGGTE SESLSMPYAT  720
PTFASGGTEF PLNSDMTTSS CVDESGYLPC SENVDQTNPN PGAFVKVHKS GSFGRSLDIS  780
KFSSYHELRS ELARMFGLEG LEDPQRSGWQ LVIVDRENDV LLLGDDPWQE FVNNVSCIKI  840
LSPLEVQQMG KEGLDLPHSA QMHRLSNSSN SCDDYTSRKD SRSNLNGIPA VGSLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein