PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN17750.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

LSD

Protein Properties

Length: 176aa MW: 18224.1 Da PI: 7.9441

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN17750.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	33.1	9.5e-11	9	33	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrt+L YPr A +V+Ca+C+ V PIN17750.1 9 CMGCRTVLLYPREAANVCCAVCNVV 33 99*********************98 PP
2	zf-LSD1	46.9	4.4e-15	48	72	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ PrGA+sVRC++C+tV PIN17750.1 48 CGGCRTLLMHPRGATSVRCSCCHTV 72 ************************9 PP
3	zf-LSD1	49	1e-15	89	113	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ PIN17750.1 89 CGNCHTMLMYPAGAPSVKCAICHFI 113 ***********************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence
MDMQSQLVCM GCRTVLLYPR EAANVCCAVC NVVNAVPPAG MDMAQLICGG CRTLLMHPRG 60 ATSVRCSCCH TVNLVPAAPA PNNVAHVNCG NCHTMLMYPA GAPSVKCAIC HFITNTGDSR 120 VPIPAHRPGG TLTSASTSST STATAHSQNQ TVVVQNPMTV DESGKLVSNV VVGVTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	4e-46	LSD family protein