PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN18022.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C3H

Protein Properties

Length: 233aa MW: 25891.8 Da PI: 8.988

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN18022.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.5	6.1e-10	62	87	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ tG+Ck+G CkF H++ PIN18022.1 62 GEKECSYYIMTGQCKFGVMCKFDHPQ 87 6789********************97 PP
2	zf-CCCH	29.7	1.1e-09	156	175	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +++rtG Ck+G++Ck++H+p PIN18022.1 156 YYLRTGDCKFGATCKYHHPP 175 8*****************97 PP
3	zf-CCCH	36.5	8.3e-12	194	220	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++rtG Ck+G+ Ck++H+p PIN18022.1 194 PGQPECLYYLRTGDCKFGAACKYHHPP 220 5789*********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MRTGIRKFGA SCKYHHPKHG VGSSAPVTLN VCGYPLRLVC LFENLGSCSI FYSITYESLL 60 QGEKECSYYI MTGQCKFGVM CKFDHPQPAG LEPVVLGDWL LNRLGAGPVY GIMLLSPSAT 120 AYTGPYLSIT SSAGLSSSSQ KGRAFPERPG QPERLYYLRT GDCKFGATCK YHHPPDLGLT 180 SSSSQKEHAF LERPGQPECL YYLRTGDCKF GAACKYHHPP ELGFRRLRWR SRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16540.3	4e-38	C3H family protein