PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN18483.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C2H2

Protein Properties

Length: 441aa MW: 49475.9 Da PI: 7.0235

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN18483.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	42.6	1.4e-13	1	34	17	50
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtsea 50 mkk+lPan+ki++da+etv+ecvsefis +tse PIN18483.1 1 MKKALPANGKIAEDARETVRECVSEFISVITSEY 34 9*******************************96 PP
2	zf-C2H2	12.3	0.00051	110	133	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cgk F++ L H+++ H PIN18483.1 110 YYCEECGKDFNSGKALGGHLSSaH 133 89************9999999877 PP
3	zf-C2H2	18.1	7.6e-06	164	184	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cg+ F+++ L H+r+H PIN18483.1 164 CVICGREFPSRKALFGHMRSH 184 ********************9 PP
4	zf-C2H2	18.4	6.1e-06	398	420	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++sF++ L rH r+H PIN18483.1 398 YTCNICNMSFKSGQALGRHKRSH 420 9********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MKKALPANGK IAEDARETVR ECVSEFISVI TSEYVNEISV VAIVFCLFWI LPCFPQSFSF 60 AFFVPMEVED KELNSQNPIQ GTCLVKFKCN RMPEKTVETA PPLPPEKENY YCEECGKDFN 120 SGKALGGHLS SAHVQSKKDN SFNKLNFNGK KGHNSLGSPM ARYCVICGRE FPSRKALFGH 180 MRSHLEGHWR WMDPRRMDLL LPAAESSDDD HVDLCEVTAP SPVANIASSS KGWCVTAKRG 240 RPEISKPPPP AMDPEPVKDS DVLHAFQKLM KFVEIHSEKQ NDEVEDVDSS SSIADNHQFK 300 KQKTESAIDV AEKKLIDSET KAEVESKTEA EKMIQENSGT STRQNYVCTT CNRSFQSHQA 360 LGGHKSSHNK FKISIINTID GDPKGDNNSV LRRQPGSYTC NICNMSFKSG QALGRHKRSH 420 KEEDKEKKKN EIDLNKLPDE E

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MKKALPANGK IAEDARETVR ECVSEFISVI TSEYVNEISV VAIVFCLFWI LPCFPQSFSF  60
AFFVPMEVED KELNSQNPIQ GTCLVKFKCN RMPEKTVETA PPLPPEKENY YCEECGKDFN  120
SGKALGGHLS SAHVQSKKDN SFNKLNFNGK KGHNSLGSPM ARYCVICGRE FPSRKALFGH  180
MRSHLEGHWR WMDPRRMDLL LPAAESSDDD HVDLCEVTAP SPVANIASSS KGWCVTAKRG  240
RPEISKPPPP AMDPEPVKDS DVLHAFQKLM KFVEIHSEKQ NDEVEDVDSS SSIADNHQFK  300
KQKTESAIDV AEKKLIDSET KAEVESKTEA EKMIQENSGT STRQNYVCTT CNRSFQSHQA  360
LGGHKSSHNK FKISIINTID GDPKGDNNSV LRRQPGSYTC NICNMSFKSG QALGRHKRSH  420
KEEDKEKKKN EIDLNKLPDE E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	1e-30	C2H2 family protein