PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN18566.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

MYB

Protein Properties

Length: 354aa MW: 40340.8 Da PI: 5.6415

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN18566.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.4	6.7e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++++++ G g+W+t ++ g+ R++k+c++rw +yl PIN18566.1 14 KGPWTPEEDQKLIEYIQKNGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.5	2.6e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ PIN18566.1 67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MGRAPCCEKN GLKKGPWTPE EDQKLIEYIQ KNGYGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHSPRL DLLDLSNILN TSIYSTNTPS QMNFSRLLGM QPFINPELIR LATSFLSSQG 180 QNQDFLLQNS QNNLQQSHLI TDNPQISQIQ TPVQDYGHLM QYENFERYPQ NELPGFGSSS 240 GQVSEWQQSD GSMLSGITDD YGSIPNYGYY GLDQPVVDPN PSSETSTFQS NSSNNFSFQS 300 VISTPSSSPT PLNSNSTHNV NTEDERESYC SNMLKFEIPD MLDVNGFMQF HDQN

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MGRAPCCEKN GLKKGPWTPE EDQKLIEYIQ KNGYGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHSPRL DLLDLSNILN TSIYSTNTPS QMNFSRLLGM QPFINPELIR LATSFLSSQG  180
QNQDFLLQNS QNNLQQSHLI TDNPQISQIQ TPVQDYGHLM QYENFERYPQ NELPGFGSSS  240
GQVSEWQQSD GSMLSGITDD YGSIPNYGYY GLDQPVVDPN PSSETSTFQS NSSNNFSFQS  300
VISTPSSSPT PLNSNSTHNV NTEDERESYC SNMLKFEIPD MLDVNGFMQF HDQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-116	MYB family protein