PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN18972.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C3H

Protein Properties

Length: 298aa MW: 31341.5 Da PI: 9.654

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN18972.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30	9e-10	102	127	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck+Gd+C+FaHg+ PIN18972.1 102 KTRLCNKYKTAEGCKFGDKCNFAHGE 127 8***********************96 PP
2	zf-CCCH	38.2	2.4e-12	265	290	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC +fa+ G C +G+rC+FaHg+ PIN18972.1 265 YKTKLCENFAK-GSCTFGERCHFAHGE 290 9********.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MEFGGAKKRG RAEGGVNGNG GFKKSKQEME SFTSGIGSKL KPCTKFFSAS GCPFGDGCHF 60 LHYVPGGIKA VTQMLGSNPA LPAAARNPVA PSFPDGPSSV VKTRLCNKYK TAEGCKFGDK 120 CNFAHGEWEL GRPTVPSHDD PRAMGQIPGR YGGGRMDPTP PNLGVAASFG ASATAKISID 180 ASLAGAVIGK SGVNSKQICR LTGAKLSVRD HESDPNLRNI ELEGSFDQIK QASQMVRELI 240 VNLSAASGPP AKHPGKPSLN PGNNYKTKLC ENFAKGSCTF GERCHFAHGE EELRKSGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	6	12	AKKRGRA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	4e-80	C3H family protein