PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN19712.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 96aa    MW: 10474 Da    PI: 9.7493
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN19712.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF915.8e-291059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                ri+n++ rqvtfskRrng++KKA+EL +LCdaev viifsstgkly+++s
  PIN19712.1 10 RIDNSTSRQVTFSKRRNGLMKKAKELAILCDAEVGVIIFSSTGKLYDFAS 59
                8***********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    
MGRGKIVIRR IDNSTSRQVT FSKRRNGLMK KAKELAILCD AEVGVIIFSS TGKLYDFASS  60
RNMYLLGSTD DDSVEADTSF LVFGNSGGAG PNMQIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.17e-36MIKC_MADS family protein