PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN19906.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family GRAS
Protein Properties Length: 256aa    MW: 27972.7 Da    PI: 5.1253
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN19906.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS202.42.7e-62316384253
        GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                 f+e++P lkf+ ++aNqaIlea++g++rvH+iDf+++qG+QWpa+lqaLa Rp+gpps+R+Tg+g+p+        e+g++La+ Ae+++++fe++ +v
  PIN19906.1   3 FYETCPHLKFARFAANQAILEAFAGKTRVHVIDFSMKQGMQWPAMLQALALRPGGPPSFRLTGIGPPS-----HDDEVGWKLAQSAETINIEFEYRGFV 96 
                 9*****************************************************************66.....45789********************* PP

        GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                 a++l+dl+ +++++++gE++aVn++++lh+ll++++++e+    vL++v++l+P++++vveqea+h ++ F
  PIN19906.1  97 ANSLADLDASMFDIREGETVAVNSIFELHQLLARPGAVEN----VLRVVRELKPEILTVVEQEANHKGSVF 163
                 ****************************************....**********************88877 PP
2GRAS39.77.3e-13193254305374
        GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 r   hetl++Wr rl++aGF+         +qa+++l+ ++ +d y ve+ +g+l+lgW++rp +++SaW+
  PIN19906.1 193 RPGFHETLAQWRTRLGSAGFQ---------QQASMILALFAeGDAYGVEQIDGCLMLGWHTRPAITASAWK 254
                 56679***************7.........69*********9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MDFYETCPHL KFARFAANQA ILEAFAGKTR VHVIDFSMKQ GMQWPAMLQA LALRPGGPPS  60
FRLTGIGPPS HDDEVGWKLA QSAETINIEF EYRGFVANSL ADLDASMFDI REGETVAVNS  120
IFELHQLLAR PGAVENVLRV VRELKPEILT VVEQEANHKG SVFDSLENRG NAVAAANGGD  180
AVAGFQWELG SGRPGFHETL AQWRTRLGSA GFQQQASMIL ALFAEGDAYG VEQIDGCLML  240
GWHTRPAITA SAWKLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-110GRAS family protein