PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN20150.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

ARF

Protein Properties

Length: 653aa MW: 73205.5 Da PI: 6.5448

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN20150.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	76.9	2.2e-24	130	231	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+kvlt sd++++g +++ +k+a+e+ + ++ +++l+ +d++g +W +k+i+r++++r++lt+GW+ Fv +++L +gD++vF + +++el PIN20150.1 130 FCKVLTASDTSTHGGFSVLRKHANEClppldmtQ--QTPTQELVAKDLHGTEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGENGEL 224 99**************************9643..445569*********************************************..449999 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+v+++ PIN20150.1 225 RVGVRSH 231 ****986 PP
2	Auxin_resp	100.2	2.9e-33	256	335	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t++ F v+Y+Pr+ s+F+v ++k+++a+++++ vGmRfkm+fe+eds+e+r+sGt+vg++dl+p +W+nSkWrsLk PIN20150.1 256 ASHAVLTQTLFVVYYKPRT--SQFIVGLNKYLEAVSHEFGVGMRFKMHFEGEDSPEKRFSGTIVGLEDLSP-HWENSKWRSLK 335 68999***********6..9*********************************************.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence
MVNRGSFSLP NSNFSAQGGG VKDVLYEELW KVCAGPLVDV PKIGEKVYYF PQGHMEQLEV 60 STNQELNQRI PMFNLPSKIL CRVFNIQLLA EQDTDEVYAQ ITLMPEADQT EPRSPDSDPE 120 EPPRLAVHSF CKVLTASDTS THGGFSVLRK HANECLPPLD MTQQTPTQEL VAKDLHGTEW 180 HFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDSFVFLRGE NGELRVGVRS HVHQQSSMPS 240 SVISSQSMHL GVLATASHAV LTQTLFVVYY KPRTSQFIVG LNKYLEAVSH EFGVGMRFKM 300 HFEGEDSPEK RFSGTIVGLE DLSPHWENSK WRSLKVQWDE PASIPRPARV SPWEIEPFVA 360 SGPSNLVQPL TMKHKRIRPH VETPVPATWH MSHELHQTNH GLEGQRIDNM TNSHTKQTPR 420 TIAEETEESK SASVWSVISN HSGPSSVKQS NSLNGRKSET VAPCRLFGID LNSPSPVPFY 480 ENSSSKSFDT PHDAGEVCIP NAVFWGDSDQ KSGVSKDSKE QKKGQFEVPT KESQSRQSHS 540 SRSRTKVQMQ GVAVGRAVDL TTLKGYDELI TELEEMFEIK GELRPRDKWE IVFTDDEGDV 600 MLMGDDPWPE FCNMVRKILI CSGQDVKKMK GSKVPRPSAE CAGTTFNVET VED

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence

MVNRGSFSLP NSNFSAQGGG VKDVLYEELW KVCAGPLVDV PKIGEKVYYF PQGHMEQLEV  60
STNQELNQRI PMFNLPSKIL CRVFNIQLLA EQDTDEVYAQ ITLMPEADQT EPRSPDSDPE  120
EPPRLAVHSF CKVLTASDTS THGGFSVLRK HANECLPPLD MTQQTPTQEL VAKDLHGTEW  180
HFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDSFVFLRGE NGELRVGVRS HVHQQSSMPS  240
SVISSQSMHL GVLATASHAV LTQTLFVVYY KPRTSQFIVG LNKYLEAVSH EFGVGMRFKM  300
HFEGEDSPEK RFSGTIVGLE DLSPHWENSK WRSLKVQWDE PASIPRPARV SPWEIEPFVA  360
SGPSNLVQPL TMKHKRIRPH VETPVPATWH MSHELHQTNH GLEGQRIDNM TNSHTKQTPR  420
TIAEETEESK SASVWSVISN HSGPSSVKQS NSLNGRKSET VAPCRLFGID LNSPSPVPFY  480
ENSSSKSFDT PHDAGEVCIP NAVFWGDSDQ KSGVSKDSKE QKKGQFEVPT KESQSRQSHS  540
SRSRTKVQMQ GVAVGRAVDL TTLKGYDELI TELEEMFEIK GELRPRDKWE IVFTDDEGDV  600
MLMGDDPWPE FCNMVRKILI CSGQDVKKMK GSKVPRPSAE CAGTTFNVET VED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.2	0.0	ARF family protein