PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN20338.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

MIKC_MADS

Protein Properties

Length: 248aa MW: 28921.1 Da PI: 8.7683

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN20338.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.3	3e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+ PIN20338.1 9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYST 59 79***********************************************96 PP
2	K-box	104.7	1.2e-34	81	174	7	100
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++e + +++ e++kLk++i+ Lqr++R+++GedLes+s k+Lq+LeqqL+++lk+iR++Kn+ll+++i elq+kek++qe+n++L kk+ e PIN20338.1 81 VANEPQSPANWPLEYSKLKARIKLLQRNHRQYMGEDLESMSQKDLQNLEQQLDTALKNIRTRKNQLLYDSICELQRKEKAIQEQNNMLAKKIRE 174 5566677899*********************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MGRGKVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALIVFSH KGKLFEYSTD 60 SCMDRILEKY ERYSFAERQL VANEPQSPAN WPLEYSKLKA RIKLLQRNHR QYMGEDLESM 120 SQKDLQNLEQ QLDTALKNIR TRKNQLLYDS ICELQRKEKA IQEQNNMLAK KIREREKELE 180 QQAQWEQQNH CNNAHHLQSL PPPPLLMAPQ LPTLNIGGTY EETAEARRNE LDLTLDSLYS 240 CHLGCFAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69120.1	1e-112	MIKC_MADS family protein