PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN20339.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

MIKC_MADS

Protein Properties

Length: 245aa MW: 27828.4 Da PI: 7.9638

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN20339.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.9	4.2e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELS+LCda+va+iifs++gklye++s PIN20339.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDADVALIIFSNKGKLYEFCS 59 79***********************************************96 PP
2	K-box	87.2	3.2e-29	81	172	7	99
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ++ +++++ +qe+ Lk+++e Lq++qRhllGedL+ Ls +eL +Le++L+ lkkiRsk ++++++q+++lq+ke+ l e n+aL++kle PIN20339.1 81 N-QSPSDEQNNYQEYLALKARVEVLQQSQRHLLGEDLGCLSTNELDHLENKLDATLKKIRSKTSQHIFDQLSDLQQKERTLLELNRALTSKLE 172 3.5667889********************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD ADVALIIFSN KGKLYEFCSS 60 SSMAETLERY HRCSYGQLEA NQSPSDEQNN YQEYLALKAR VEVLQQSQRH LLGEDLGCLS 120 TNELDHLENK LDATLKKIRS KTSQHIFDQL SDLQQKERTL LELNRALTSK LEGSSSSLQS 180 TWQLQPGSNV QYQPQLVQPD IFFEPLEPNN TPQIRYTMAP NNVGVPNNVA ATTQNANGML 240 PGWMH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	1e-86	MIKC_MADS family protein