PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN20496.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 95aa    MW: 10573.4 Da    PI: 10.9552
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN20496.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.12.6e-24951143
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                krien s rqvtfskR+ng+ KKA ELSvLCdaeva+iifs++
  PIN20496.1  9 KRIENASSRQVTFSKRKNGLQKKACELSVLCDAEVALIIFSQK 51
                79***************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    
MVRGKVEMKR IENASSRQVT FSKRKNGLQK KACELSVLCD AEVALIIFSQ KAIKGIFTLS  60
RPEPKGPGRE IGLRIYRAQP EIELLTTRSK GISNG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.12e-25MIKC_MADS family protein