PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN20671.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

LBD

Protein Properties

Length: 305aa MW: 33800.1 Da PI: 5.7303

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN20671.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.2	1.3e-38	43	141	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rrkCa+dC+lapyfp++++++f n+h+lFG++n+++++k+l++ +++am++++++++ara dPv G++++i++l+qq++ ++ael+ + + PIN20671.1 43 ACAACKYHRRKCASDCILAPYFPHDSQRQFLNAHRLFGVKNIIRIVKDLEPPAKDHAMRTIIFQSDARAADPVGGCYRIIRDLEQQINLAQAELEIVLH 141 7*********************************************************************************************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence
MQSTNTILTH NNNNNNSSIT STNITTIHDG AHHRTHGGST TQACAACKYH RRKCASDCIL 60 APYFPHDSQR QFLNAHRLFG VKNIIRIVKD LEPPAKDHAM RTIIFQSDAR AADPVGGCYR 120 IIRDLEQQIN LAQAELEIVL HHLALCRAAA AARHQAAGGD VGINYDEKWR GAAAAAAPYA 180 EEEMGVIDDV NSWNCMNGNG NVNGESTSSS FIHENGNHMR SLSMEECNHH DMKKILDQFS 240 GDDDESHEEY KFDSHGNIVP SNNNSILTEE NGTFKEDEGT FSYIDQDHND LKAAATYFTL 300 TNCDI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-46	LBD family protein