PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN20859.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family YABBY
Protein Properties Length: 217aa    MW: 24147.4 Da    PI: 7.9026
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN20859.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY242.21.1e-74171802170
       YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesastsvss 98 
                 ++  +s+q+Cyv+CnfC+t+lavsvP tslfk+vtvrCGhCt+llsvn++      a + hl++s+  +  lle+ k++ +nl  n+++   +++ v+ 
  PIN20859.1  17 HLSPNSDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPSANQLHLGHSFLSPqnLLEDIKNSPSNLMINQHN--PNESLVP- 112
                 567789****************************************9999999888899999999987634666666666655444433..3333333. PP

       YABBY  99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         +e+p++p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  PIN20859.1 113 ----VRGIDELPKPPVANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 180
                 ....4567899**999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MSSSSAFPPD HHHHHQHLSP NSDQLCYVHC NFCDTVLAVS VPCTSLFKTV TVRCGHCTNL  60
LSVNMRGLLL PSANQLHLGH SFLSPQNLLE DIKNSPSNLM INQHNPNESL VPVRGIDELP  120
KPPVANRPPE KRQRVPSAYN RFIKDEIQRI KAGNPDISHR EAFSAAAKNW AHFPHIHFGL  180
MPDQPVKKPN VCQQEGDDVM LKDGFLASHA NVGVSPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-90YABBY family protein