PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN20897.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C3H

Protein Properties

Length: 517aa MW: 55845 Da PI: 8.0709

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN20897.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.8	1.3e-11	158	182	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+Gd+CkF H+ PIN20897.1 158 GEKDCAHYMQTRTCKFGDSCKFDHP 182 7889********************8 PP
2	zf-CCCH	33.9	5.3e-11	210	234	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++t Ck+G rCkF+H++ PIN20897.1 210 EPDCPYFLKTQRCKFGIRCKFNHPK 234 789********************96 PP
3	zf-CCCH	39.4	9.9e-13	257	281	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG+Ck+G++CkF+H++ PIN20897.1 257 EPPCAFYMKTGQCKFGATCKFHHPK 281 79*********************96 PP
4	zf-CCCH	39	1.4e-12	326	351	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++e C+f+++tG CkyG++C+++H+ PIN20897.1 326 PGEEDCPFYLKTGSCKYGATCRYNHP 351 5899*********************9 PP
5	zf-CCCH	41.9	1.6e-13	410	435	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+++++tG+Ck+G++CkF+H+ PIN20897.1 410 PGQPACDYYMKTGICKFGSTCKFHHP 435 57899********************9 PP
6	zf-CCCH	35.3	2e-11	469	490	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tG CkyG++CkF H+p PIN20897.1 469 CPYYMKTGMCKYGATCKFDHPP 490 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence
MANQLYGYTS STYGGGGGAS STLYSSRSLT DPYLSSDASL LGSSSRYLSA ESLSSSALSS 60 SMLYNPDSYS IRVSGISMTT PTHSYGPPGV DVGSTIVSTE SLYAGLKRGS SESLYYQTLL 120 GAHNKIGQTE AWYSTNPLAK RPRYESTSHL PIYPQRPGEK DCAHYMQTRT CKFGDSCKFD 180 HPIWVPEGGI PDWKEVPPVP SESLPERPSE PDCPYFLKTQ RCKFGIRCKF NHPKDRIVPP 240 GASQDGDVSV LPERPSEPPC AFYMKTGQCK FGATCKFHHP KGVHIQSAGE GNSNEVQNKI 300 FGDAMSVQSP FAPALLHNSK GLPIRPGEED CPFYLKTGSC KYGATCRYNH PDRYSINPPA 360 AAIAPSLLTS PSTHFNIGVV APTASLLPTF DPRLAQTTLG LGISIYPQRP GQPACDYYMK 420 TGICKFGSTC KFHHPVDRSA PSASVTESVQ ENVKLSLAGL PRREGAIHCP YYMKTGMCKY 480 GATCKFDHPP PGEVMVVATM QVASSSAVGE GKENGDV

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence

MANQLYGYTS STYGGGGGAS STLYSSRSLT DPYLSSDASL LGSSSRYLSA ESLSSSALSS  60
SMLYNPDSYS IRVSGISMTT PTHSYGPPGV DVGSTIVSTE SLYAGLKRGS SESLYYQTLL  120
GAHNKIGQTE AWYSTNPLAK RPRYESTSHL PIYPQRPGEK DCAHYMQTRT CKFGDSCKFD  180
HPIWVPEGGI PDWKEVPPVP SESLPERPSE PDCPYFLKTQ RCKFGIRCKF NHPKDRIVPP  240
GASQDGDVSV LPERPSEPPC AFYMKTGQCK FGATCKFHHP KGVHIQSAGE GNSNEVQNKI  300
FGDAMSVQSP FAPALLHNSK GLPIRPGEED CPFYLKTGSC KYGATCRYNH PDRYSINPPA  360
AAIAPSLLTS PSTHFNIGVV APTASLLPTF DPRLAQTTLG LGISIYPQRP GQPACDYYMK  420
TGICKFGSTC KFHHPVDRSA PSASVTESVQ ENVKLSLAGL PRREGAIHCP YYMKTGMCKY  480
GATCKFDHPP PGEVMVVATM QVASSSAVGE GKENGDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-174	C3H family protein